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© 2000 American Society for Clinical Oncology Abnormalities of Chromosome Bands 13q12 to 13q14 in Childhood Acute Lymphoblastic LeukemiaFrom the Department of Genetics, Parker Hughes Institute; Childrens Cancer Group ALL Biology Reference Laboratory and Parker Hughes Institute, St Paul; Division of Hematology-Oncology, Childrens Hospitals and Clinics, Minneapolis, MN; Group Operations Center, Childrens Cancer Group, Arcadia; Department of Preventive Medicine, University of Southern California; Department of Pediatric Hematology-Oncology, Childrens Hospital, Los Angeles, CA; Department of Pediatrics, Hematology-Oncology, University of Michigan, Ann Arbor, MI; Department of Pediatric Hematology-Oncology, University of Chicago, Chicago, IL; Childrens National Medical Center and the George Washington University School of Medicine, Washington, D.C.; Division of Oncology, Childrens Hospital of Philadelphia, PA; and Department of Pediatrics, Memorial Sloan-Kettering Cancer Center, New York, NY. Address reprint requests to Nyla A. Heerema, PhD, c/o The Childrens Cancer Group, Attention Ms Lucia Noll, PO Box 60012, Arcadia, CA 91066-6012.
PURPOSE: Little is known about nonrandom deletions of chromosome bands 13q12 to 13q14 (13q1214) in acute lymphoblastic leukemia (ALL). We determined the prognostic significance of cytogenetically identified breakpoints in 13q1214 in children with newly diagnosed ALL treated on Childrens Cancer Group protocols from 1988 to 1995. PATIENTS AND METHODS: Breakpoints in 13q1214 were identified in 36 (2%) of the 1,946 cases with accepted cytogenetic data. Outcome analysis used standard life-table methods. RESULTS: Seventeen patients (47%) with an abnormal 13q1214 were classified, according to the National Cancer Institute (NCI), as poor risk, and 15 patients (42%) were standard risk; four (11%) were infants less than 12 months of age. Eight cases had balanced rearrangements of 13q1214, 27 patients had a partial loss of 13q, and one had both a partial gain and a partial loss. The most frequent additional abnormalities among these patients were an abnormal 12p, a del(6q), a del(9p), a 14q11 breakpoint, and an 11q23 breakpoint. Nineteen patients were pseudodiploid, 10 were hyperdiploid, and seven were hypodiploid. Patients with an abnormal 13q1214 had significantly worse event-free survival than patients lacking such an abnormality, with estimates at 6 years of 61% (SD = 14%) and 74% (SD = 1%), respectively (P = .04; relative risk = 1.74). Overall survival, however, was similar for the two groups (P = .25). The prognostic effect of an abnormal 13q was attenuated in a multivariate analysis adjusted for NCI risk status and ploidy (P = .72). CONCLUSION: Aberrations of 13q1214 may contribute to leukemogenesis of childhood ALL and confer increased risk of treatment failure but are associated with other poor-risk features.
CHROMOSOMAL aberrations involving chromosome bands 13q12 to 13q14 (13q1214) have been described in various hematologic malignancies including chronic lymphocytic leukemia (CLL), acute and chronic myeloid leukemia, and myeloproliferative syndrome.1-5 The observation of a high frequency of deletions of the D13S25 locus distal to the retinoblastoma gene in patients with B-cell CLL has suggested that disruption of a putative tumor suppressor gene is a critical leukemogenic event in this disease.6-8 Translocation t(8;13)(p11;q12), resulting in fusion of the FGF gene on chromosome 8 and the ZNF198/RAMP/FIM gene on chromosome 13,9-11 is a hallmark of a subset of atypical myeloproliferative disorders collectively referred to as the 8p11 myeloproliferative syndrome.12 Rearrangements involving the ETV6 gene at chromosome band 12p13 and 13q12 have been found in patients with acute myeloid leukemia with t(12;13)(p13;q12).5 Recently, a putative gene at 13q12 involved in the t(12;13) fusion with ETV6 has been identified as the CDX2 homeobox gene.13 Other recent data demonstrated the occurrence of common breakpoints in 13q14 in patients with acute myeloid and lymphoid leukemias with t(12;13), t(10;13), and t(9;13).14 The clinical significance of cytogenetic aberrations involving 13q1214 in childhood acute lymphoblastic leukemia (ALL) is unclear. Most reports of such abnormalities involved only small numbers of patients.15 Therefore, we have examined the prevalence and clinical significance of cytogenetically identified breakpoints at 13q1214 in a large cohort (N = 1,946) of children with ALL treated on contemporary intensive protocols of the Childrens Cancer Group (CCG).
Patients Diagnosis of ALL required determination of lymphoblast morphology by Wright-Giemsa staining of bone marrow smears, negative lymphoblast staining for myeloperoxidase, and cell surface expression of two or more lymphoid differentiation antigens.16 Immunophenotyping was performed centrally in the CCG ALL Biology Reference Laboratory by direct or indirect immunofluorescence and flow cytometry, as previously described.16 Patients were classified as B-lineage or T-lineage based on expression of CD19, CD24, CD2, CD3, CD5, and CD7, as previously described.17
The current study involved children with newly diagnosed ALL enrolled onto CCG risk-adjusted protocols between 1988 and 1995. Children 2 to 9 years of age with WBC counts less than 10,000/µL (low-risk ALL) were enrolled onto CCG-188118; children 2 to 9 years of age with WBC counts 10,000 to 49,999/µL or age 12 to 23 months with WBC counts less than 50,000/µL (intermediate-risk ALL) were enrolled on CCG-1891.19 After completion of these studies, patients with low- or intermediate-risk ALL were enrolled onto a single protocol, CCG-1922, for National Cancer Institute (NCI) standard-risk ALL (age 1 to 9 years with WBC counts < 50,000/µL).20 Children 1 to 9 years old with WBC counts
Cytogenetic Analysis Between 1988 and 1995, a total of 5,120 children were entered onto the CCG studies included in this analysis. Among these, 1,946 cases had centrally reviewed and accepted cytogenetic data; 36 cases (2%) had an abnormality with a breakpoint in 13q1214, and 1,910 cases (98%) lacked such an abnormality. Treatment assignments on the studies included in this analysis were not based on the presence of an abnormal 13q1214. In general, treatment assignments were not based on any other cytogenetic abnormality, although patients with certain features, such as a t(9;22)(q34;q11) or a t(4;11)(q21;q23), may have been eligible for a bone marrow transplant in first remission. On CCG-1881, however, patients with a t(9;22)(q34;q11), a t(4;11)(q21;q23), a t(8;14)(q24;q32), a t(2;8)(p12;q24), or a t(8;22)(q24;q11) were nonrandomly assigned to more intensive therapy.
The cohort of patients with accepted cytogenetic data was similar to concurrently enrolled patients who did not have accepted cytogenetic data with respect to most presenting features, except that patients with accepted data were more likely to be white (81% v 71%, respectively; P = .001) and to have a T-lineage immunophenotype (15% v 11%, respectively; P = .001), WBC counts
Statistical Methods
Clinical Features of Children With ALL and Abnormalities of Chromosome Bands 13q1214 Presenting features of patients with a 13q1214 abnormality were similar to those of patients lacking such an abnormality, except that patients with an abnormal 13q1214 were more likely to be less than 12 months or 10 years of age (P = .005), to have NCI poor-risk ALL20 status (P = .009), or to have pseudodiploid, hypodiploid, or low hyperdiploid (47 to 50 chromosomes) leukemic-cell karyotypes (P = .001). Among the 22 patients with immunophenotypic data, 20 had B-lineage ALL.
Cytogenetic Features of Children With Abnormal Chromosome Bands 13q1214
In four patients, the abnormality involving 13q was the sole aberration (two cases were deletions, and two cases were balanced translocations). Among the remaining patients, additional abnormalities that did not involve 13q1214 included an abnormal 12p in seven patients, a del(6q) in four patients, a del(9p) in four patients, 14q11 breakpoints in three patients, 11q23 breakpoints in two patients, and 15q1315 breakpoints in two patients. There were no patients with a Philadelphia chromosome. Interestingly, 16 of the 17 patients with an abnormal 13q who were classified as NCI poor risk had deletions with breakpoints in bands 13q1214. In contrast, among the 15 patients with an abnormal 13q1214 classified as standard risk, six had balanced translocations and nine had rearrangements resulting in partial loss of 13q. Among the four infants, two had balanced translocations and two had unbalanced translocations involving breakpoints at 13q1214.
Treatment Outcome
Twenty-seven of the 36 patients with an aberration at 13q1214 are survivors; 22 have survived event-free for 3.3 to 8.7 years. Among the 14 patients who experienced an event, there were eight marrow relapses, two CNS relapses, one combined marrow/CNS relapse, one testicular relapse, one induction failure, and one death in remission. Of the 14 events, three occurred in the group of 15 standard-risk patients, eight occurred in the group of 17 poor-risk patients, and three occurred in the group of four infants. Only five (three poor-risk patients and two infants) of the 12 patients who relapsed remain alive, with follow-up ranging from 1.4 months to 5.8 years after relapse (Table 1). Among patients with an abnormal 13q1214, all 14 events occurred within 2.7 years of study entry. In contrast, among patients without this abnormality, only 343 (70%) of 489 events occurred within the same time period. A Cox regression analysis that included ploidy and NCI risk group was used to determine the multivariate effect of an abnormality of chromosome bands 13q1214. Among patients with an abnormal 13q1214, most were pseudodiploid (n = 19), low hyperdiploid (47 to 50 chromosomes; n = 9), or hypodiploid with 45 chromosomes (n = 6); one patient was hyperdiploid with more than 50 chromosomes, and one was hypodiploid with less than 45 chromosomes. In the multivariate analysis, the prognostic significance of an abnormal 13q1214 was not maintained (P = .72; relative risk = 0.908; 95% confidence interval, 0.530 to 1.556). Ploidy seemed to have the most attenuating influence, reducing the unadjusted P from .04 to .46. NCI risk group attenuated the effect from P = .04 to .18. Within the NCI standard risk group, there was no difference in outcome for patients with or without an abnormal 13q1214 (P = .91). Among NCI poor-risk patients, however, there was a trend for worse outcome for the 17 patients with an abnormal 13q1214 (P = .11; relative risk = 1.79).
Although aberrations of 13q1214, particularly t(8;13)(p11;q12), have been studied extensively in myeloid leukemias,1-5 such abnormalities have been reported in only small numbers of children with ALL. A search of the Catalog of Chromosome Aberrations in Cancer (1998)15 revealed a total of 42 ALL patients with a breakpoint in 13q1214. Among these 42 cases, there were 20 balanced rearrangements, 20 rearrangements resulting in partial deletions of 13q, and two rearrangements resulting in partial gain of 13q. In the current study, we observed a 13q1214 breakpoint in 36 (2%) of 1,946 children with ALL. Approximately half of these patients were classified as poor risk by NCI criteria, although notably, there were no patients with a breakpoint at 13q1214 who also had a Philadelphia chromosome. The most common abnormality, occurring in 20 of the 36 patients was a deletion involving 13q1214. Balanced and unbalanced rearrangements together accounted for the remaining cases. Multiple partner chromosome bands were involved with 13q1214 in these rearrangements. Most patients had multiple abnormalities in addition to the 13q1214 breakpoint, including recurrent abnormalities, such as a breakpoint in 15q1315, an abnormal 12p, a del(6q), and an abnormal 9p. The high proportion of patients with a deletion of 13q1214 supports the hypothesis forwarded with respect to CLL with del(13q) that a tumor suppressor gene may occur at this locus.6-8 Alternatively, the observation of numerous cases with rearrangements involving 13q1214 is consistent with reports of oncogenic fusion products resulting from rearrangements of 13q in cases of 8p11 myeloproliferative syndrome9-11 as well as acute myeloid leukemia.13 Notably, all but one of the poor-risk patients with an abnormal 13q1214 had deletions; whereas six of the 15 standard-risk patients had balanced translocations, and nine had unbalanced rearrangements, including deletions, resulting in partial loss of 13q. The clinical and biologic significance of these observations awaits further study. It is possible that deletions involving a putative tumor suppressor gene could result in a more aggressive leukemia than balanced rearrangements that result in activation of an oncogenic fusion transcript. Compared with concurrently enrolled patients who lacked 13q1214 abnormalities, patients with an aberration at 13q1214 had significantly poorer EFS but similar overall survival. The predominant event for both groups was a marrow relapse. All events among patients with an abnormal 13q1214 occurred early, within 2.7 years of study entry; whereas 30% of events among patients without a 13q1214 abnormality occurred later. Among patients with NCI poor-risk status, there was a trend for worse outcome for those with an abnormal 13q1214 compared with those lacking this abnormality. In addition, the prognostic effect of an abnormal 13q1214 was attenuated in a multivariate analysis that included ploidy and NCI risk status, suggesting that additional poor-risk features contributed to the univariate effect of this cytogenetic aberration.
Supported in part by research grants including the Childrens Cancer Group Chairmans Grant nos. CA-13539 and CA-60437 from the National Cancer Institute, National Institutes of Health.
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Copyright © 2000 by the American Society of Clinical Oncology, Online ISSN: 1527-7755. Print ISSN: 0732-183X
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